PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0047s0031.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 187aa    MW: 20241.5 Da    PI: 6.5108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0047s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-183787154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         s y GVr ++ +g+++AeIrd + ng  +r++lg+f+tae Aa a+++a+++ +
  Kalax.0047s0031.1.p 37 SPYVGVRKRP-WGKFAAEIRDSTRNG--ARVWLGTFDTAESAALAYDQAALASR 87
                         689*******.**********44465..**********************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-223797IPR016177DNA-binding domain
SMARTSM003801.7E-3438102IPR001471AP2/ERF domain
PROSITE profilePS5103221.9043896IPR001471AP2/ERF domain
PfamPF008471.2E-123988IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-293997IPR001471AP2/ERF domain
PRINTSPR003679.8E-103950IPR001471AP2/ERF domain
CDDcd000181.49E-273997No hitNo description
PRINTSPR003679.8E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
EYFTSHDHHS SSSSGNFVQA HLSNIIDDEA SNKGQSSPYV GVRKRPWGKF AAEIRDSTRN  60
GARVWLGTFD TAESAALAYD QAALASRGPM AVLNFPEEVV RESLRELKCT VEENGSPVLA  120
LKKKHAHSKK KKAAGRTTGP AMRCAEKIGH GRGDDEELGL YGTTDNHALV LEDLGADYLE  180
ELLSLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-263999666ATERF1
3gcc_A5e-263999666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206287.11e-49hypothetical protein PRUPE_ppa016384mg
TrEMBLM5W2C01e-49M5W2C0_PRUPE; Uncharacterized protein
STRINGPGSC0003DMT4000266271e-47(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-29ethylene response factor 1